What the Cell
A2.3

Viruses

HL only
3 hours6 statementsTextbook pp. 88–101

Guiding questions

  1. How do viruses manage with so few genes?
  2. How do viruses differ from one another?

Slides

Slide 1 of 17

Notes

Written for this site from the class slides, with textbook page references for each statement. The chapter is on pages 88–99 of the course textbook. Image credits are on slide 17.

What a virus is

A2.3.1

Features shared by all viruses

pp. 88–90

Viruses are very small, from about 20 to 400 nm, and of a fixed size, because they are assembled from parts rather than growing. Each has DNA or RNA, never both, inside a capsid of protein subunits. They have no cytoplasm, no ribosomes and few or no enzymes, so they can reproduce only inside a host cell, using its enzymes and ribosomes. A virus is not a cell.

A2.3.2

Diversity of viruses

pp. 90–93
Slide: electron micrographs of tobacco mosaic virus, SARS-CoV-2 and HIV, with a table of enveloped and non-enveloped viruses

Genomes vary: double-stranded DNA in phage lambda, positive-sense single-stranded RNA in coronaviruses, which acts directly as mRNA, and two copies of single-stranded RNA in HIV, a retrovirus whose reverse transcriptase makes DNA from it. Capsids may be helical, icosahedral or complex. Some viruses, such as HIV and coronaviruses, have an envelope of host membrane with viral glycoproteins, taken as they bud out of the cell. The great variety suggests viruses did not all evolve from one ancestor.

Reproduction

A2.3.3

The lytic cycle

pp. 93–95
Slide: the five stages of the lytic cycle of phage lambda, with an electron micrograph of phages on E. coli

Phage lambda attaches to a receptor on E. coli and injects its DNA. The host’s enzymes replicate the phage DNA and its ribosomes make capsid proteins, using the host’s ATP, nucleotides and amino acids. New phages assemble, and enzymes break down the cell wall, so the cell bursts (lysis) and releases about a hundred phages.

A2.3.4

The lysogenic cycle

pp. 95–96

Instead of taking over the cell at once, lambda DNA can be inserted into the bacterial chromosome as a prophage. It is copied every time the bacterium divides, and the cell survives. Stress, such as UV light, can cut the prophage out, and the lytic cycle begins. Lysogeny is favoured when bacteria grow poorly, because lysis would then release few phages.

Origins and evolution

A2.3.5

Where viruses came from

pp. 96–98

Three hypotheses compete: progressive (genes that escaped from cells, such as transposons, gained a coat), regressive (cells that became parasites and lost most of their genes) and virus first (self-replicating RNA before cells). No gene is shared by all viruses, so they probably arose several times. Their shared features, such as capsids and small size, are best explained by convergent evolution to a parasitic life. They use the same genetic code as their hosts.

A2.3.6

Rapid evolution: influenza and HIV

pp. 98–99

Viruses have short generation times, huge numbers and, in RNA viruses, no proofreading, so mutations are frequent and selection by immunity or drugs is strong. In influenza, antigenic drift slowly changes the H and N surface antigens, so vaccines are updated each year; antigenic shift, the swapping of whole RNA segments between strains, can produce a new subtype and a pandemic. HIV’s reverse transcriptase makes many errors, so many variants arise in one person; combinations of drugs are used so that resistance is unlikely.

Videos

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Note-taking sheet

Print this guide and complete it as you work through the slides and videos. It asks for your own explanations, so close the notes while you try each section.

First page of the note-taking sheet

Quick self-check

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Practice questions

A printable worksheet covering all six statements, from quick recall to data questions and a longer answer. It has 40 marks and takes about 40 minutes, or you can do one section at a time.

Your teacher has the mark scheme.

First page of the worksheet

Practical

Modelling lytic and lysogenic cycles

Model30 minA2.3.3, A2.3.4

You will need: Counters, large sheet for tallying, dice

  1. Start with one infected cell, where each lytic round releases five new viruses
  2. Tally the growth over five rounds
  3. Repeat, using a dice roll to decide whether each virus enters the lysogenic stage
  4. Compare the two graphs and explain the difference

Safety: No practical hazards.

Carry this out with your teacher's supervision and follow your school's lab rules.

Nature of science and TOK

Syllabus statements

Summarised in our own words. Use each code to find the exact wording in your textbook or the IB subject guide.

  • A2.3.1Structural features that all viruses sharep. 89
  • A2.3.2The range of structures found in virusesp. 90
  • A2.3.3The lytic cycle of a virusp. 94
  • A2.3.4The lysogenic cycle of a virusp. 95
  • A2.3.5Evidence that viruses originated several times from other organismsp. 96
  • A2.3.6Why viruses can evolve so quicklyp. 98

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