What the Cell
D1.2

Protein synthesis

4 hours11 statementsTextbook pp. 615–624

Guiding questions

  1. How does a cell turn a DNA base sequence into a chain of amino acids?
  2. What keeps protein synthesis reliable?

Slides

Slide 1 of 19

Notes

Written for this site from the course textbook and class slides, with page references for each statement. The chapter is on pages 615–624 of the course textbook. Image credits are on slide 19.

Transcription

D1.2.1

Transcription: making RNA from a DNA template

p. 616

RNA polymerase binds to DNA at the start of a gene and separates the strands as it moves along. One strand acts as the template. RNA nucleotides pair with it, and RNA polymerase links them with covalent bonds. The RNA then separates, and the double helix reforms.

D1.2.2

Hydrogen bonds and base pairing

p. 617
Slide: base sequences of the DNA strands and the mRNA

Hydrogen bonds form between complementary bases. Adenine on the template pairs with uracil in RNA, as RNA has no thymine. The mRNA therefore matches the non-template strand, with U in place of T.

D1.2.3

Why DNA templates stay stable

p. 618

Transcription copies a base sequence without changing the DNA, so a gene can be transcribed many times. This matters in non-dividing body cells, such as neurons, where the same sequences must be conserved throughout life.

D1.2.4

Transcription and gene expression

p. 618

Not all genes in a cell are expressed at any given time. Transcription is the first stage of expression, so it is a key point for switching a gene on or off. Liver cells and neurons have the same genes, but they transcribe different ones.

Translation

D1.2.5

Translation: making polypeptides from mRNA

p. 618

The base sequence of mRNA decides the amino acid sequence of a polypeptide. The language changes here from bases to amino acids, which is why this stage is called translation.

D1.2.6

What mRNA, ribosomes and tRNA do

p. 619
MoleculeRole
mRNACarries codons from the gene, and binds to the small subunit of a ribosome
RibosomeHolds mRNA and tRNA, with two tRNAs bound to the large subunit at once; forms peptide bonds
tRNACarries a specific amino acid, and pairs with a codon using its anticodon
D1.2.7

Codons and anticodons

p. 619

A codon is three bases on mRNA, and an anticodon is three complementary bases on tRNA. Hydrogen bonds hold them together. For example, codon G C A pairs with anticodon C G U.

D1.2.8

Features of the genetic code

p. 620
  • Triplet: two bases give only 16 combinations, too few for 20 amino acids. Three bases give 64.
  • Degenerate: more than one codon can code for the same amino acid.
  • Universal: almost all organisms read codons in the same way, which suggests a common ancestor.

Watch out: degenerate does not mean that one codon can give several amino acids.

D1.2.9

Reading a table of mRNA codons

pp. 621–622
Slide: a table of amino acids with a worked example

Split the sequence into codons, then look up each in turn. A U G G C U U G U U A A gives Met, Ala, Cys, then stop. A stop codon adds no amino acid.

D1.2.10

How a ribosome builds a polypeptide

p. 622

A tRNA binds to the next codon. A peptide bond links the growing chain to the new amino acid. The ribosome moves one codon along, and the empty tRNA leaves. The cycle then repeats, adding one amino acid each time.

D1.2.11

Mutations that change protein structure

pp. 623–624

In sickle cell anaemia, one base in the gene for beta-globin is substituted. The codon GAG becomes GUG, so glutamic acid is replaced by valine. At low oxygen, haemoglobin forms long fibres, and red blood cells become rigid and sickle-shaped. They can block small blood vessels, and their short life leads to anaemia.

Videos

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Note-taking sheet

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First page of the note-taking sheet

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Practice questions

A printable worksheet covering all eleven statements, from quick recall to sequence questions and a longer answer. It has 45 marks and takes about 45 minutes, or you can do one section at a time.

Your teacher has the mark scheme.

First page of the worksheet

Practical

From gene to polypeptide

Model30 minD1.2.6, D1.2.8, D1.2.9

You will need: Printed DNA template, mRNA codon table, labelled cards for tRNA and amino acids

  1. Write the mRNA from the template strand
  2. Use cards to act out tRNA matching each codon at the ribosome
  3. Build the amino acid chain using the codon table
  4. Note which features of the code you relied on

Safety: No practical hazards.

Carry this out with your teacher's supervision and follow your school's lab rules.

Nature of science and TOK

Syllabus statements

Summarised in our own words. Use each code to find the exact wording in your textbook or the IB subject guide.

  • D1.2.1Transcription: making RNA from a DNA templatep. 615
  • D1.2.2How hydrogen bonds and complementary base pairing work in transcriptionp. 617
  • D1.2.3Why DNA templates remain stablep. 618
  • D1.2.4Why genes must be transcribed in order to be expressedp. 618
  • D1.2.5Translation: making polypeptides from mRNAp. 618
  • D1.2.6What mRNA, ribosomes and tRNA each do in translationp. 619
  • D1.2.7How tRNA and mRNA pair by complementary basesp. 619
  • D1.2.8The main features of the genetic codep. 620
  • D1.2.9Reading a table of mRNA codonsp. 621
  • D1.2.10How a ribosome moves step by step along mRNA, joining amino acids with peptide bondsp. 622
  • D1.2.11Mutations that alter the structure of a proteinp. 623

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